Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1027437 with 1459 members (galactose-1-phosphate uridylyltransferase)

LUCA /

Completeness score: 0.44

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

98.5%

This HOG has 112 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E1010454	Bacteria	62		75.8%	2
HOG:E0998206	Bacteria	46		84.8%	2
HOG:E0727621	Eutheria	8		87.5%	2
HOG:E0306448	Spermatophyta	6		66.7%	2
HOG:E0623883	Drosophila	6		100.0%	2
HOG:E0906693	s__Mycobacterium tuberculosis	6		100.0%	2
HOG:E0813871	Eukaryota	3		100.0%	2
HOG:E0990769	Bacteria	2715		98.9%	1
HOG:E0801981	Eukaryota	1220		98.7%	1
HOG:E0801811	Eukaryota	602		89.4%	1
HOG:E0821953	Eukaryota	534		3.0%	1
HOG:E0801672	Eukaryota	511		99.4%	1
HOG:E0993884	Bacteria	443		100.0%	1
HOG:E0806432	Eukaryota	412		100.0%	1
HOG:E0828169	Eukaryota	295		17.6%	1
HOG:E0482032	Fungi	191		100.0%	1
HOG:E0793604	Opisthokonta	173		94.2%	1
HOG:E0017740	Archaea	151		100.0%	1
HOG:E0654197	Protostomia	131		88.5%	1
HOG:E0813886	Eukaryota	113		99.1%	1
HOG:E0806062	Eukaryota	110		99.1%	1
HOG:E0319950	Streptophyta	103		1.9%	1
HOG:E0320952	Viridiplantae	103		67.0%	1
HOG:E0475576	Pezizomycotina	99		100.0%	1
HOG:E0018651	Archaea	98		100.0%	1

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